seqMeta 1.6.0 Released

Release Summary

This release fixes a couple edge cases which were handled incorrectly. The minimum R version was bumped to 3.1.0. One new function prepScores2 was added.

seqMeta 1.6.0

• Migrated to git / github
  • Bug Reports and Feature Requests should be submitted github.
• Minimum R version moved to 3.1.0
• Duplicated SNP in snpinfo gene no longer pulls from the genotype matrix twice.
• Monomorphic snps with caf != 0 were handled incorrectly.
• Binomial models when genotypes imputed outside of seqMeta did not match when models were imputed by seqMeta. Very slight differences in the covariance structure.
• Replaced any(is.na(Z)) with anyNA(Z)
• Genotype range test now checks that they are [0, 2].
• SNPInfo in seqMetaExamples had incorrect type of snpNames and aggregateBy.
• Automatically convert (with warning) aggregateBy and snpName columns to type character if they are not already.
• Added new function prepScores2

prepScores2

prepScores2 is a drop in replacement for prepScores, prepScoresX and prepCox. The only difference is the family argument should be text. gaussian() becomes "gaussian", binomial() becomes "binomial" and "cox" is used for survival models.